“…In MD simulations, the total forces on all the atoms are calculated, and then the dynamics of designed systems are simulated by discrete integration of Newton’s equations of motions with a shorter timescale, to determine the movement atom’s response to those forces [ 125 , 126 , 127 , 128 ]. There is a wide range of MD simulations: rational design and development of drugs, catalysts, conformational analysis of proteins, polymers, the molecular formation mechanism of green solvents, aerosols, transportation of lithium-ion in electrode, transportation of ion in the cationic-head-group-based AEM, and others [ 120 , 129 , 130 , 131 , 132 , 133 , 134 , 135 , 136 , 137 , 138 , 139 , 140 ]. The standard software for MD simulations includes, to name a few, in alphabetical order: AMBER SUITE, CP2K, GROMACS, NAMD, LAMMPS, and others [ 139 , 140 , 141 , 142 , 143 , 144 , 145 , 146 , 147 , 148 , 149 , 150 , 151 ].…”