“…Ala and Phe substitutions were evaluated at sites expected to be on the interior of the protein; these mutants were expected to alter the relative energetics of the kinase- versus phosphatase-promoting states by altering core packing geometry ( Airola et al, 2013 ; Ferris et al, 2011 ; Hulko et al, 2006 ; Bi et al, 2018 ). We also examined the effects of Trp substitutions in the TM helix at positions expected to map to the headgroup region of the bilayer, as similar substitutions often induce changes in signaling ( Draheim et al, 2005 ; Lehning et al, 2017 ; Inda et al, 2016 ; Monzel and Unden, 2015 ; Yusuf and Draheim, 2015 ; Yusuf et al, 2018 ; Adase et al, 2013 ). We also included several mutations, particularly in the C-terminal half of the HAMP domain, that show altered autokinase activity as compared to WT PhoQ.…”