“…DNA samples were purified using a DNeasy kit (Qiagen, San Diego, CA), and total DNA concentrations were adjusted to 20 to 40 ng/ml. Primers (5ЈAACCACCACGACAACCACAA3Ј and 5ЈTGCAGGACATCTGC ACAAAGTA3Ј) were used to specifically amplify a 65-bp fragment of cruzipain, with a protocol similar to one we have previously described (10). However, instead of using Sybr green detection as in our previous method, amplicon generation was detected using a 6-carboxyfluorescein (FAM)/N,N,NЈ,NЈ-tetramethyl-6-carboxyrhodamine (TAM) probe (5ЈTGCCCCAGGACCGTCCCCA 3Ј) (Synthegen, Houston, TX), TaqMan PCR master mix (Applied Biosystems, Foster City, CA), 900 nM each primer, and 100 to 200 ng of sample DNA.…”