Sequences of different sizes are generated when DNA from homozygous HLA-Dw/DR typing cells are digested with restriction endonuclease and analyzed by hybridization with a HLA-D region class H antigen j-chain cDNA probe. The patterns of hybridization were highly polymorphic but one endonuclease, BamfIl, defined sequences unique to all HLA-Dw/DR specificities 1-8 except HIA-Dw/DR 2 and 6; however, these two specificities were resolved with the enzyme EcoRI. Digestion with other endonucleases such as P8t I results in patterns of restriction fragments that differ between homozygous typing cells of the same HLA-Dw/DR specificity. HLA-D region. f-chain probes permit HLA-D region genotyping at the DNA level and may allow detection of genes controlling the association of HLA specificities with a wide variety of diseases.The HLA-D region class II antigens are membrane, proteins that are expressed on many cells involved in the immune response. The antigens are highly polymorphic and seem to determine a number of cellular immune functions (1, 2). The HLADw/DR determinants defined by serological and mixed lymphocyte culture test are associated not only with certain diseases, often of autoimmune character (3, 4), but also with characteristics of the immune response to antigens in normal individuals (5-7). Present evidence suggests that class II antigens are encoded 'by several loci (DR, DC, SB) on the short arm of chromosome 6 (cf. ref. 8). The polymorphic character of the class II antigens resides in the 3 chain, whereas the a chain appears less heterogeneous (9-11). Restriction enyzme polymorphism analysis of genomic DNA with cloned cDNA of class II antigen a-chain or (-chain mRNA showed single hybridization bands with a-chain (12-14) but showed multiple bands with 13-chain probes (14,15).In the present study we have used the HLA-D region (3chain cDNA probe pDR-f3-1 (11,16) Hybridization Probe. The probe for hybridization was derived from the recombinant plasmid pDR-/3-1, which contains DNA sequences complementary to a class II antigen 83-chain mRNA (11,16), the sequence of which demonstrates homology to the mouse I-A class, II antigens and is tentatively thought to represent a HLA-DC A chain (11). The pDR-/3-1 cDNA was digested with Pst I and Pvu II and two fragments representing nucleotides 1-790 of the clone (14) were isolated by agarose gel electrophoresis, followed by electroelution into dialysis tubing. These restriction fragments correspond to most of the coding region and some 3' nontranslated sequences and do not contain naturally occurring EcoRI, BamHI, or Pst I restriction sites (11,16