One-sentence summary: Carotenoids are not just required as core components for plastid biogenesis, 21 they can be cleaved into an apocarotenoid signal that regulates etioplast and chloroplast development 22 during extended periods of darkness. 23 Key words: carotenoid, post-transcriptional regulation, apocarotenoid signal, prolamellar body, 24 etioplast, photoperiod 25 ABBREVIATIONS 26 ccr carotenoid and chloroplast regulation 27 rccr2 revertant of ccr2 28 DAG days after germination 29 YL yellow leaf 30 2 GL green leaf 31 NF norflurazon 32 ACS apocarotenoid signal 33 34 3 ABSTRACT 35Carotenoids are core plastid components, yet a regulatory function during plastid biogenesis 36 remains enigmatic. A unique carotenoid biosynthesis mutant, carotenoid chloroplast regulation 2 (ccr2), 37 that has no prolamellar body (PLB) and normal PROTOCHLOROPHYLLIDE OXIDOREDUCTASE 38 (POR) levels, was used to demonstrate a regulatory function for carotenoids under varied dark-light 39 regimes. A forward genetics approach revealed how an epistatic interaction between a -carotene 40 isomerase mutant (ziso-155) and ccr2 blocked the biosynthesis of specific cis-carotenes and restored 41 PLB formation in etioplasts. We attributed this to a novel apocarotenoid signal, as chemical inhibition of 42 carotenoid cleavage dioxygenase activity restored PLB formation in ccr2 etioplasts during 43 skotomorphogenesis. The apocarotenoid acted in parallel to the transcriptional repressor of 44 photomorphogenesis, DEETIOLATED1 (DET1), to post-transcriptionally regulate 45 PROTOCHLOROPHYLLIDE OXIDOREDUCTASE (POR), PHYTOCHROME INTERACTING 46 FACTOR3 (PIF3) and ELONGATED HYPOCOTYL5 (HY5) protein levels. The apocarotenoid signal 47 and det1 complemented each other to restore POR levels and PLB formation, thereby controlling plastid 48 development. 49 50 4 -carotene isomerase (ZISO) and cis-trans-carotene isomerase (CRTISO) convert the 65 colourless phytoene into the pinkish-red coloured all-trans-lycopene (Bartley et al.