Hexagonal perovskite derivatives Ba 3 MNbO 8.5 (M: W and Mo) are attracting much interest due to high oxide-ion conductivity and potential use for many applications. This work shows the electrical conductivities of Ba 3 WNbO 8.5 (3.7 × 10 −2 S cm −1 ) and Ba 3 MoNbO 8.5 (8.8 × 10 −2 S cm −1 ) at 900 °C and confirms higher activation energy for conductivity of Ba 3 WNbO 8.5 than that of Ba 3 MoNbO 8.5 . Key factors governing the conductivity and activation energy are the ratio of tetrahedral O3 to octahedral O2 oxide ions and diffusion pathways in Ba 3 MNbO 8.5 . However, the O2/O3 disorders and oxide-ion diffusion paths are unresolved important issues in Ba 3 MNbO 8.5 . Here, Rietveld and maximumentropy method (MEM) analyses of in situ neutron-diffraction data up to 800 °C were performed to obtain the crystal structure and neutron scattering length densities (NSLDs) of Ba 3 WNbO 8.5 . MEM NSLDs show two-dimensional oxide-ion migration through the octahedral O2 and tetrahedral O3 sites in the intrinsically oxygen-deficient layer. Numbers of the interstitial O3 and lattice O2 atoms n(O3) and n(O2) increase and decrease, respectively, with increasing temperature, which indicates that the O2/O3 disorder is more prominent at high temperatures. The O2/O3 disordering makes the minimum NSLD on the O2−O3 path higher, which enhances oxide-ion conductivity, leading to higher activation energies of Ba 3 WNbO 8.5 compared with Ba 3 MoNbO 8.5 .