2023
DOI: 10.21203/rs.3.rs-3148464/v1
|View full text |Cite
Preprint
|
Sign up to set email alerts
|

Unified metagenomic method for rapid detection of bacteria, fungi and viruses in clinical samples

Adela Alcolea-Medina,
Christopher Alder,
Luke Snell
et al.

Abstract: Clinical metagenomic sequencing can detect microorganisms causing infection directly from clinical samples. Depletion of host DNA is key to increasing sensitivity and reducing turnaround time (TAT). Several human DNA depletion methods have been previously published for detecting microorganisms with DNA and RNA genomes in clinical samples using metagenomics techniques, however, these methodologies only allow for the detection of either DNA or RNA microbes, but not both simultaneously. Thus, we have developed a … Show more

Help me understand this report
View published versions

Search citation statements

Order By: Relevance

Paper Sections

Select...
1

Citation Types

0
1
0

Year Published

2024
2024
2024
2024

Publication Types

Select...
1

Relationship

0
1

Authors

Journals

citations
Cited by 1 publication
(1 citation statement)
references
References 16 publications
0
1
0
Order By: Relevance
“…Yet, the most prevalent M types were still emm12 and emm1. The severity of GAS infection was associated with the presence of spea and spej superantigen genes [74]. In the Czech Republic, there was no change in emm types of S. pyogenes before and after the COVID-19 pandemic.…”
Section: Discussionmentioning
confidence: 95%
“…Yet, the most prevalent M types were still emm12 and emm1. The severity of GAS infection was associated with the presence of spea and spej superantigen genes [74]. In the Czech Republic, there was no change in emm types of S. pyogenes before and after the COVID-19 pandemic.…”
Section: Discussionmentioning
confidence: 95%