Unraveling the biogeographical history of Chrysobalanaceae from plastid genomes

Bardon, Léa; Sothers, Cynthia; Prance, Ghillean Τ.; Malé, Pierre‐Jean G.; Xi, Zhenxiang; Davis, Charles C.; Murienne, Jérôme; García‐Villacorta, Roosevelt; Coissac, Éric; Lavergne, Sébastien; Chave, Jérôme

doi:10.3732/ajb.1500463

Cited by 26 publications

(23 citation statements)

References 95 publications

(141 reference statements)

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“…The infA and rps7 were pseudogene. These results were reported from Malpighiales and Oxalidales (Tangphatsornruang et al 2011;Huang et al 2014;Bardon et al 2016;Jo et al 2016Jo et al , 2017.…”

supporting

confidence: 84%

The complete plastome sequence from the family Malpighiaceae, Bunchosia argentea (Jacq.) DC

Kim

Cheon

et al. 2019

Mitochondrial DNA Part B

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In this study, we determined the complete plastome sequence of Bunchosia argentea (Jacq.) DC. (Malpighiaceae) (NCBI acc. no. MK390344). The gene order and the structure of the B. argentea plastome are collinear with those of the typical plastomes of land plants. The complete plastome size is 158,741 bp in length and consists of a large single-copy region of 88,345 bp and a small single-copy region of 16,816 bp, which are separated by a pair of 26,790 bp-long inverted repeat regions. The overall AT content of the plastome sequence is 63.5%. The plastome contains 110 genes, of which 76 are protein-coding genes, 30 are tRNA genes, and four are rRNA genes. The rpl32 was lost and two genes (infA and rps7) were pseudogenized. Sixteen genes contain one intron and two genes have two introns. A total of 87 simple sequence repeat loci were identified within the genome. Phylogenetic analysis revealed that B. argentea and two Byrsonima species formed a clade with 100% bootstrap support.

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supporting

confidence: 84%

The complete plastome sequence from the family Malpighiaceae, Bunchosia argentea (Jacq.) DC

Kim

Cheon

et al. 2019

Mitochondrial DNA Part B

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“…The infA and rpl32 genes were lost in the G. mangostana plastome. The two gene losses were also reported from other Malpighialian families (Tangphatsornruang et al 2011;Huang et al 2014;Bardon et al 2016;Cheon et al 2017). The ycf3 gene usually consists of three exons and two introns in angiosperm.…”

supporting

confidence: 62%

The complete plastome of tropical fruit Garcinia mangostana (Clusiaceae)

Kim

et al. 2017

Mitochondrial DNA Part B

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The complete plastome sequence of Garcinia mangostana L. (Clusiaceae) is completed in this study (NCBI acc. no. KX822787). This is a first complete plastome sequence from the Clusiaceae. The complete plastome size is 158,179 bp in length and consists of a large single copy of 86,458 bp and a small single copy of 17,703 bp, separated by two inverted repeats of 27,009 bp. The G. mangostana plastome shows four minor structural modifications including inf A gene loss, rpl 32 gene loss, ycf 3 gene intron loss and a 363 bp inversion between trn V-UAC and atp E gene. The plastome contains 111 genes, of which 77 are protein-coding genes, 30 are tRNA genes and four are rRNA genes. The average A-T content of the plastome is 63.9%. A total of 110 simple sequence loci are identified from the genome. Phylogenetic analysis reveals that G. mangostana is a sister group of Erythroxylum novogranatense (Erythroxylaceae) with 78% bootstrap support.

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“…The 52 extratropical group is not geographically segregated, but includes temperate tree 53 assemblages from North America and southern South America, connected by a 54 Figure 1 The geographic, evolutionary and environmental relationships of the two principal 56 evolutionary groups (from K=2 clustering analysis). A) Geographic distribution of angiosperm tree 57 assemblages and their affiliation with either the tropical (n = 7145) or extratropical (n = 2792) evolutionary 58 group; B) Distribution of assemblages over elevation and latitude showing that the extratropical group is 59 largely restricted to high elevations at low latitudes; C & D) Distribution of assemblages over the first two 60 axes of an ordination based on evolutionary composition with assemblages in C colored according to group 61 affiliation and in D as to whether or not they experience freezing temperatures in a regular year (from (31 )). 62 3/17 high-elevation corridor in low latitudes ( Fig.…”

mentioning

confidence: 99%

Freezing and water availability structure the evolutionary diversity of trees across the Americas

Cortés

Pennington

Baker

et al. 2019

Preprint

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AbstractThe historical course of evolutionary diversification shapes the current distribution of biodiversity, but the main forces constraining diversification are unclear. We unveil the evolutionary structure of tree species diversity across the Americas to assess whether an inability to move (dispersal limitation) or to evolve (niche conservatism) is the predominant constraint in plant diversification and biogeography. We find a fundamental divide in tree lineage composition between tropical and extratropical environments, defined by the absence versus presence of freezing temperatures. Within the Neotropics, we uncover a further evolutionary split between moist and dry forests. Our results demonstrate that American tree lineages, though broadly distributed geographically, tend to retain their ancestral environmental relationships and that phylogenetic niche conservatism is the primary force structuring the distribution of tree biodiversity.

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Unraveling the biogeographical history of Chrysobalanaceae from plastid genomes

Abstract: Given the diverse ecologies exhibited by extant species, we hypothesize that the rapid diversification of Chrysobalanaceae following the colonization of the Neotropics was triggered by habitat specialization during the complex geological and paleoclimatic history of the Neotropics.

Cited by 26 publications

References 95 publications

The complete plastome sequence from the family Malpighiaceae, Bunchosia argentea (Jacq.) DC

The complete plastome sequence from the family Malpighiaceae, Bunchosia argentea (Jacq.) DC

The complete plastome of tropical fruit Garcinia mangostana (Clusiaceae)

Freezing and water availability structure the evolutionary diversity of trees across the Americas

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