A full term male neonate, with birth weight 1.750 kilograms, was diagnosed to have an anorectal malformation at birth. A cut back anoplasty was performed on the third day of life. The baby was referred to our hospital one day later, for bilious vomiting and abdominal distension. On admission, the general condition was poor. The child was dehydrated and icteric. The tongue was coated with slough. On examination, there was mild epigastric distension. All haematological investigations except platelet count (40,000 per cu.mm) were within normal range. Total and direct bilirubin levels were 12.2 mg% and 6.8 mg% respectively. Mother tested negative for HIV antibody test. With the clinical and radiologic diagnosis of intestinal perforation, exploratory laparotomy was performed on the fourth day of life. A gangrenous jejuno-ileal segment was resected and an anastomosis was done. On excision, a ten centimeter long dull and dusky intestinal segment was received. Mesenteric vessel thrombosis was seen. On opening, the mucosa was blackish and edematous. The resection margins were viable. Histopathology showed transmural necrosis with neutrophilic inflammatory infiltrate and plenty of nuclear debris [Table/ Fig-1a-d Gastrointestinal mucormycosis (GIM) is a rare opportunistic fungal infection. One third of all patients are children and of these, 50% are infants. The most common clinical mimic is necrotizing enterocolitis (NEC). It has to be differentiated from this entity as the treatment is entirely different. High index of suspicion by the clinicians and the pathologists aids in early diagnosis and immediate treatment. If untreated, it has a frequent fatal outcome. Very few survivors of GIM are found in literature. We report a rare case of a surviving neonate of GIM. morphology was different from Aspergillus where the hyphae are slender, septate and show acute angle branching. Mesenteric vessels showed fresh thrombi with fungal hyphae within. Gomori's methenamine silver stain highlighted the fungi black [Table/ Fig-1a-d]. Material from tongue slough was sent for mycology culture after the diagnosis of mucormycosis was given on histopathology. However, culture results were noncontributory. The patient was treated with intravenous liposomal Amphotericin B. The patient responded well, had a functioning anastomosis at the time of discharge and is well after a follow up of six months.