ABSTRACT.A cytogenetic study was carried out in a girl with virilized external genitalia, who showed a �aryotype containing a � isochro-, who showed a �aryotype containing a � isochroshowed a �aryotype containing a � isochroa �aryotype containing a � isochromosome in mosaic form: mos46,X,iso(�)(qter→p11.3::p11.3→qter) [80]/45,X[17]/46,X,+mar [3]. �he chromosome aberrations were con�he chromosome aberrations were confirmed by fluorescence in situ hybridization analysis, with both whole chromosome paint � probe and centromeric X chromosome probe. �he molecular analyses by PCR detected the presence of the SR�, DAZ and AMGY genes, confirming the presence of the whole long arm and almost whole short arm of the � chromosome. We suggest that the structural alteration of the � chromosome was a new mutation, which occurred in the initial mitotic divisions of the embryo, originally 46,X�. �he brea�points occurred on the distal extremity of the short arm with later fusion of its extremities producing a � isochromosome. �he later numerical alteration occurred as a consequence of chromosomal instability. Although almost all cells (80%) in peripheral blood belonged to the iso(�) line with a duplicated SR� gene, this did not determine male sexual differentiation in the patient. �he result of accurate evaluation provides correct sex assignment and the prevention of the neoplastic degeneration of a dysgenetic gonad.