Slow slip events (SSEs) with durations ranging from days to more than a decade have been observed in plate subduction zones around the world. In the Kanto district in Japan, several SSEs have been identified based on geodetic observations. However, none of these events have had durations largely exceeding a year. In this study, we show that long-term SSEs with durations longer than 3 years occurred before the year 2000 and after 2007 on the upper interface of the Philippine Sea Plate at depths of 30-40 km. The fault model determined by inversion of global navigation satellite system data is located northeast of Tokyo Bay, where a seismic gap and low seismic wave velocities were detected by seismological observations. Moreover, the acceleration periods of the fault slip corresponded well with increases in the background seismicity for shallower earthquakes. The slip history was also temporally correlated with the long-term shear stress changes governed mainly by non-tidal variations in the ocean bottom pressure. However, the predicted slip from the long-term stress change was too small to reproduce the observed slow slips. To prove the causal relationship between the SSEs and the external stress change, more advanced modeling is necessary to confirm whether such a small slip can trigger an SSE.