Dust is the collection of fine particles of solid matter, and it is a major issue of atmospheric pollution. Dust particles are becoming the major pollutants of the urban environment due to hyperbolic manufacturing and automobile pollution. These atmospheric pollutants are not only hazardous for human beings, but they also affect tree growth, particularly in urban environments. This study was designed to examine the changes in morphological and physiological traits of three tree species seedlings (Eucalyptus camaldulensis, Conocarpus erectus, and Bombax ceiba) in response to different dust types. In a pot experiment under controlled conditions, three-month-old seedlings of selected trees species were subjected to four treatments of dust: T1 = controlled; T2 = wood dust; T3 = soil dust; and T4 = carbon dust. During the whole experiment, 10 g/plant/dose was applied in 8 doses with a one-week interval. The results depicted that the growth was the maximum in T1 (control) and the minimum in T4 (carbon dust). In our findings, B. ceiba performed better under the same levels of dust pollution as compared with the other two tree species. The B. ceiba tree species proved to be the most tolerant to dust pollution by efficiently demolishing oxidative bursts by triggering SOD, POD, and CAT under different dust types compared to controlled conditions. Stomatal conductance, photosynthetic rate, and transpiration rate were negatively influenced in all three tree species in response to different dust applications. Based on the findings, among these three tree species, B. ceiba is recommended for dust polluted areas followed by E. camaldulensis and Conocarpus erectus due to their better performance and efficient dust-foraging potential.