Infantile hemangiomas (IHs) are the most common benign tumors in early childhood. They show a distinctive mechanism of tumor growth in which a rapid proliferative phase is followed by a regression phase (involution). Propranolol is an approved treatment for IHs, but its mechanism of action remains unclear. We integrated and harmonized microRNA and mRNA transcriptome data from newly generated microarray data on IHs with publicly available data on toxicological transcriptomics from propranolol exposure, and with microRNA data from IHs and propranolol exposure. We identified subsets of putative biomarkers for proliferation and involution as well as a small set of putative biomarkers for propranolol's mechanism of action for IHs, namely EPAS1, LASP1, SLC25A23, MYO1B, and ALDH1A1. Based on our integrative data approach and confirmatory experiments, we concluded that hypoxia in IHs is regulated by EPAS1 (HIF-2α) instead of HIF-1α, and also that propranolol-induced apoptosis in endothelial cells may occur via mitochondrial stress. Infantile hemangiomas (IHs) are the most common benign tumor of the vascular endothelium in infants and are present in 4 to 10% of children younger than 12 months 1,2. They manifest in any part of the body but around 60% of the cases arise in the head and neck 3. IHs have a unique growth pattern that is divided into three phases: proliferation, quiescence and involution 4. Despite the fact that the majority of IHs involute completely by 7 years of age, their hyper-proliferation can cause significant functional and disfiguring consequences and morbidities such as ulceration, bleeding, and pain. It is estimated that up to 40% of the lesions will require either surgical or medical intervention 3,5. Histologically, IHs in the proliferative phase show a lack of organization of blood vessels with densely packed capillaries composed of immature endothelial cells surrounded by pericytes, whereas during involution the capillaries are replaced with fatty and fibrous tissue 6. These findings suggest that the proliferation phase is orchestrated by angiogenesis or growth factors that lead to high mitotic rates. Among such markers reported in the literature are vascular endothelial growth factor A (VEGF-A) 7 , basic fibroblast growth factor (bFGF), proliferating cell nuclear antigen (PCNA), type IV collagenase 8 , and insulin-like growth factor 2 (IGF-2) 9. On the other hand, during the involution phase there is a high expression of antiangiogenic factors (e.g., tissue inhibitor of metalloproteinase TIMP1) 8 and increasing apoptosis of endothelial cells 10. However, high expression of growth factors in both the proliferating and involution phases (e.g. bFGF) makes it difficult to clearly identify causative factors for IHs' development. From the clinical perspective, it is important to find biomarkers that robustly differentiate between proliferation and involution phases on IHs, with the hope that those biomarkers will guide medical decisions towards optimal treatments. Propranolol is a non-selective β-adre...