In metabolomics, the investigation of an association between many metabolites and one trait (such as age in humans or cultivar in foods) is a central research question. On this topic, we present a complete statistical analysis, combining selected R packages in a new workow, which we are sharing completely, according to modern standards and research reproducibility requirements. We demonstrate the workow using a large-scale study with public data, available on repositories. Hence, the workow can directly be re-used on quite dierent metabolomics data, when searching for association with one covariate of interest.