Background: One of the serious complications induced by Schistosoma japonicum infection is the development of liver cirrhosis. Several studies have assessed the role of gut microbiota in cirrhosis of different etiologies, but none has done so in the context of S. japonicum infection in humans. Here, to explore the possible role of gut microbiota in S. japonicum infection-induced liver cirrhosis, we conducted an observational clinical study.Methods: Twenty-four patients with S. japonicum infection-induced liver cirrhosis and 25 age- and gender-matched controls from Zhejiang Province, China, were enrolled in the study. Fecal samples were collected and used for 16S rRNA gene hypervariable V4 region Illumina MiSeq sequencing.Results: Eight hundred seven operational taxonomic units (OTUs) were detected, of which 491 were common in the two groups, while 123 and 193 were unique for the control and cirrhosis groups, respectively. Overall, no significant differences in both alpha and beta diversities and overall microbiota structure were found in the two groups. However, Bacilli (Class) and Lactobacillales (Order) were significantly higher in patients with S. japonicum infection-induced liver cirrhosis than in healthy individuals.Conclusions: Altogether, our results suggest that the gut microbiota of S. japonicum infection-induced liver cirrhosis patients is similar to that of healthy individuals.