Background The vast occurrence of organic micropollutants in surface waters has raised concerns about drinking water safety and public health. The Tai Hu Basin region in China, a typical developing and populous area, is facing the challenge of water pollution. To ensure drinking water safety, the knowledge on how treatment techniques and raw water quality affect the quality of finished water must be improved. The aim of the current study was to evaluate drinking water quality in relation to source water origin and treatment strategies. Five drinking water treatment plants (DWTPs), using three different source waters in the Tai Hu River Basin, (i) Yangtze River, (ii) Wetland River Network, and (iii) Lake Tai Hu, were studied by analyzing 291 micropollutants in raw and finished water.Results Major differences in water characteristics were observed among the source waters. The dominating group of micropollutants in the River Network was pesticides, while Yangtze was mainly polluted by flame retardants. The total concentration of poly- and perfluoroalkyl substances (PFASs) in Tai Hu water was far higher than in others. In total, 51 compounds were detected in finished water, with an overall average total concentration of 730 ± 160 ng L -1 . The removal efficiency of the detected compounds in the DWTPs averaged 24 ± 149%, which highlights the major challenge for the DWTPs to remove emerging organic micropollutants through current treatment processes.Conclusions Our study showed that if the source water contains high levels of PFASs and organophosphorus flame retardants, even advanced treatment procedures are inefficient in removing the micropollutants, and the finished water may contain cumulative levels in the mg L -1 range. On the other hand, if pesticides and pharmaceuticals dominate, high overall treatment efficiencies may be obtained if using advanced treatment techniques. DWTPs are advised to use advanced treatment techniques or alternative water sources to guarantee the safety of drinking water. As surface water systems are highly impacted by upstream activities, efforts should also be made in the comprehensive water sector for improved surface water quality.