Human acid /3-glucosidase (D-glucosyl-Nacylsphingosine glucohydrolase, EC 3.2.1.45) cleaves the glucosidic bonds of glucosylceramide and synthetic aglucosides. The deficient activity of this hydrolase is the enzymatic defect in the subtypes and variants of Gaucher disease, the most prevalent lysosomal storage disease. To isolate and characterize the catalytic site of the normal enzyme, brominated 3H-labeled conduritol B epoxide (3H-Br-CBE), which inhibits the enzyme by binding covalently to this site, was used as an affinity label. Under optimal conditions 1 mol of 3H-Br-CBE bound to 1 mol of pure enzyme protein, indicating the presence of a single catalytic site per enzyme subunit. After V8 protease digestion of the 3H-Br-CBE-labeled homogeneous enzyme, three radiolabeled peptides, designated peptide A, B, or C, were resolved by reverse-phase HPLC. The partial amino acid sequence (37 residues) of peptide A (Mr, 5000) was determined. The sequence of this peptide, which contained the catalytic site, had exact homology to the sequence near the carboxyl terminus of the protein, as predicted from the nucleotide sequence of the full-length cDNA encoding acid /3-glucosidase.Human acid ,-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase, EC 3.2.1.45), a lysosomal enzyme, cleaves the /3-glucosyl linkage in glucosylceramide (GC) as well as synthetic P3-glucosides (1,2). This membrane-associated glycoprotein is a homomer whose mature glycosylated subunit has a Mr of 67,000-73,000 (3-5). The enzyme is hydrophobic and requires detergents, negatively charged lipids, and/or a "co-glucosidase" for optimal hydrolysis of GC or synthetic substrates (6-9). Detailed studies of the effects and interactions of a variety of enzyme modifiers have indicated that the active site of the enzyme contains at least three domains with differing specificities: (i) the catalytic site, a hydrophilic pocket that recognizes P3-glucosyl moieties and conduritol B epoxide (CBE); (ii) an aglycon binding site that is hydrophobic and has affinity for the alkyl chains ofGC; and (iii) a hydrophobic third domain (9) or "allosteric" site (10)