M anagement of Mycoplasma genitalium infections is challenging because the limited treatment options have been affected by rapidly evolving resistance to antimicrobial drugs. Molecular approaches are the preferred method of M. genitalium detection, and resistance is determined genotypically. 23S rRNA mutations are associated with macrolide resistance and azithromycin treatment failures (1-3), whereas fluoroquinolone resistance is associated with mutations in the quinolone resistance-determining region, specifically in the gyrA and parC genes (4). Azithromycin is the first-line treatment for M. genitalium infections in New Zealand; second-line treatment relies on moxifloxacin, a fluoroquinolone. A high proportion (72%) of macrolide resistance has been reported in sexual health clinic (SHC) patients in our region (5), and elsewhere in New Zealand fluoroquinolone resistance is reported in 23.3% of M. genitalium-positive specimens from SHC attendees (3), consistent with the high prevalence of macrolide and fluoroquinolone resistance in the Asia-Pacific region (1,3,6). The Study We performed a retrospective study of all specimens referred to the Microbiology Department at Auckland City Hospital (Auckland, New Zealand) for M. genitalium testing in 2017. Referral sites were predominantly general practices in Auckland and SHCs in the Auckland, Northland, and Waikato regions. Ethics approval was granted by the Health and Disability Ethics Committee (approval no. 16/CEN/188). DNA had been extracted from specimens following a diagnostic workflow and stored at −80°C. We retrieved DNA samples that tested positive for M. genitalium using real-time PCR (5,7) for this study. We detected 23S rRNA mutations at nucleotide positions 2058 and 2059 (Escherichia coli numbering) by using the commercially available PlexPCR kit Resistance Plus MG (SpeeDx, https://plexpcr.com) (5) and gyrA and parC mutations by using PCR amplification of M. genitalium nucleotides 172-402 of gyrA and 164-483 of parC (8), followed by sequencing on the Applied Biosystems 3130xl sequencer (Life Technologies, https://www.thermofisher.com). Sequences were aligned against M. genitalium reference genes (Gen-Bank accession nos. CP003773 for gyrA and parC for U25549) by using SeqMan II (DNASTAR, https:// www.dnastar.com) and the mutations reported by using M. genitalium numbering. We compared prevalence of resistance-associated mutations in community and SHC cohorts by using a χ 2 test (α = 5%). We tested 302 clinical specimens from 247 patients; 33% (101/302) of samples from 34% (84/247) of patients were M. genitalium DNA-positive. Four samples from 3 patients were excluded from subsequent analyses because insufficient PCR products were obtained for sequencing. We used the remaining 97