Icosahedral virus-like particles formed by the self-assembly of polyomavirus capsid proteins (Py-VLPs) can serve as useful nanostructures for delivering nucleic acids, proteins, and pharmaceuticals into animal cells and tissues. Four predominant surface-exposed loops in the VP1 structure offer potential sites to display sequences that might contribute new targeting specificities. Introduction into each of these loops of sequences derived from the amino-terminal fragment of urokinase plasminogen activator (uPA) or a related phage display peptide reduced the solubility of VP1 molecules when expressed in insect cells, and insertions into the EF loop reduced VP1 solubility least. Coexpression in insect cells of the uPA-VP1 molecules and VP1 containing a FLAG epitope in the HI loop permitted the formation of heterotypic Py-VLPs containing uPA-VP1 and FLAG-VP1. These heterotypic VLPs bound to uPAR on the surfaces of animal cells. Heterotypic Py-VLPs containing ligands for multiple cell surface receptors should be useful for targeting specific cells and tissues.The polyomavirus virion is composed of 72 pentameric subunits arranged in an icosahedral lattice with an approximate diameter of 50 nm (51). Polyomavirus virus-like particles (PyVLPs) of essentially the same dimensions and shape are formed by the self-assembly of the major capsid protein VP1 (55, 56). The structural framework for VP1 is an antiparallel -sheet with jelly roll topology from which emanate four loops (58-60). The BC, DE, and HI loops closely interact and are located at the outward-facing end of the -sheet; the EF loop, originating from the inward-facing end, is located on a side of the -sheet (59, 60). A shallow groove formed between the BC1 and HI loops binds oligosaccharides terminating in ␣-2,3-linked sialic acid, expressed on many animal cells (8,18,58,60); the EF loop, together with the DE loop, contains motifs for integrin binding, which is important for cell susceptibility at a postattachment level (6). Among different strains of polyomavirus, the four VP1 surface-exposed loops exhibit sequence variability (3,17,36,39,53) and the HI loop has been used predominantly as a site for insertion so as to display on the surface of Py-VLPs the Escherichia coli dihydrofolate reductase (DHFR) (22), protein Z (21), a WW domain peptide (57), and a polyanionic adapter sequence (62).The urokinase plasminogen activator receptor (uPAR) is a glycosylphosphatidylinositol-linked protein expressed on the apical surfaces of endothelial cells (46) and certain epithelial cells (26) and leukocytes (48) to promote proteolysis (13), cell adhesion (7, 66), migration (5, 15), and chemotaxis (9,14,27,28,42,52). uPAR is expressed by many cancer cells, where it is correlated with metastasis and poor prognosis (10, 29-32, 43, 63), and is a potential target for drug and gene therapy. Also, uPAR is expressed on the apical surface of human airway epithelia and might be used to target delivery of DNAs to correct the genetic defect in individuals with cystic fibrosis (12). Se...