The decrease in the sensitivity of electrospray ionization mass spectrometry caused by the presence of metal salts, such as sodium chloride, in the sample matrix is well known and is particularly problematic for biological samples. We report here that addition of high levels of ammonium acetate can improve analyte signal in aqueous electrospray solutions and counteracts the signal suppression caused by sodium chloride. A ~3-fold improvement in S/N is obtained by adding 8 M ammonium acetate to aqueous solutions of cytochrome c without added sodium chloride. No organic solvents or acids are added into the electrospray solutions. The signal-to-noise ratios of cytochrome c and ubiquitin (10 −5 M) ions formed from aqueous solutions containing 2.0 × 10 −2 M sodium chloride are improved by factors of ~7 and 11, respectively, by adding 7 M ammonium acetate to the solution. We propose that this effect is a result of the precipitation of Na + and Cl − from solution within the evaporating electrospray droplets prior to the formation of gas-phase protein ions. This method is potentially useful for improving the abundance of protein ions formed from solutions in which the molecules have a nativelike conformation and is particularly advantageous for such solutions that have high levels of sodium.Electrospray ionization (ESI) 1 is invaluable for generating multiply charged molecular ions of large molecules, such as proteins and oligonucleotides, for molecular weight measurement by mass spectrometry (MS) 2,3 and identification or structural characterization by tandem mass spectrometry (MS/MS). 4-11 The multiple charging of analyte ions increases the effective mass range of mass spectrometers and promotes the formation of structurallyinformativefragmentionsduringMS/MSexperiments. 4-11 Molecular weight measurements of proteins have been made using as little as ~10 −18 mol of sample. 12 However, the sensitivity of ESI-MS is typically lowered by the presence of salts, detergents, acids, and other species in the sample matrix. 13-21 For example, Wang and Cole reported that the addition of 10 −2 M cesium chloride to electrospray solutions of lysozyme (10 −6 M) resulted in a 330-fold reduction in analyte ion abundance. 15 Addition of 10 −2 M ammonium acetate produced a 30-fold reduction in analyte ion abundance. 15 The signal suppression caused by salts is particularly problematic for the analysis of biological samples where the physiological ionic strength is ~0.15 M. 22Several methods have been developed to counteract matrix effects in ESI-MS. The offending species can be removed from solution prior to ESI-MS using a variety of techniques, including liquid chromatography, 23,24 ion exchange, 25,26 solid-phase extraction, 27,28 and dialysis. 23,29 These sample cleanup methods can be automated and performed on-line, reducing the labor and time required for an analysis. 23-29 The use of nanoelectrospray (na-noES) 30 provides a substantial improvement in sensitivity for salt-containing solutions over that obtained with conventio...