IntroductionAddressing the global demand for rice production necessitates innovative approaches to enhance upland rice yield in rainfed agroecosystems, considering the challenges posed by increasing population, limited land fertility, low productivity, and water availability.MethodsIn this study, our study investigated the impact of biochar and organic fertilizer on ten promising rice lines (G1 – G10) and two control (G11 – G12) cultivars under rainfed conditions. The experimental design used a split-plot design with four soil amendments as main plots, namely control, organic fertilizer, biochar, and biochar + organic fertilizer and 12 rice genotypes as subplot.ResultsThe absolute attainable yield gaps, differentiating organic and control (GAP1), biochar + organic and control (GAP2), and biochar and control (GAP3), ranged from 1.5 to 3.7 or increased of 91–580%, 0.8 to 3.5 (72–560%), and 0.6 to 2.58 tons/ha (58–472%), respectively. Notably, G2 + organic exhibited the highest positive absolute yield gap, ranging from 1.1 to 5.38 tons/ha, based on the yield gap matrix. Furthermore, genotype main effect plus genotype-environment interaction (GGE) biplot analysis identified G2 as the most promising rice line, displaying superior yield performance for cultivation in biochar and organic amended soils.DiscussionThese findings provide valuable insights for farmers, governments, and stakeholders, offering a roadmap to optimize rainfed areas for rice production, serving as practical guidance to enhance overall rice productivity in rainfed agroecosystems.