A wastewater treatment plant (WWTP) prototype coupled with Moringa oleifera seeds (MOSs) was developed to evaluate its effectiveness to reduce metallic trace elements (MTEs) in domestic wastewater. The WWTP is composed of a septic tank (F0) where wastewater is treated by biological processes under anaerobic conditions, followed by a bacterial filter (F1) where wastewater is filtered under aerobic conditions, followed by an infiltration well (F2), which provides additional filtration of wastewater before discharge into the soil. MTEs present in waters can bind with humic substances contained in colloid particles and then be eliminated by coagulation–flocculation with a cationic polyelectrolyte. MOSs contain positively charged cationic polymers that can neutralize the colloids contained in waters, which are negatively charged. Based on this observation, 300 mg·L−1 of MOS was added into F0, 50 mg·L−1 into F1, and 50 mg·L−1 into F2 mg·L−1. MOS activation in samples was performed by stirring rapidly for 1.5 min, followed by 5 min of gentle stirring and 3 h of settling. The data analysis shows that wastewater samples had significant concentrations of MTEs, particularly for Cu, Ni, Sr, and Ti, and sediment samples had high amounts of Cr, Cu, Ni, Sr, Ti, and V. The addition of MOS to F0, F1, and F2 samples resulted in reductions in MTE concentration of up to 36%, 71%, 71%, 29%, 93%, 81%, 13%, 52%, and 67% for Co, Cr, Cu, Ni, Pb, Se, Sr, Ti, and V, respectively. The quantified MTEs (As, Co, Cr, Cu, Ni, Pb, Se and V) in treated samples were reported to be lower than UN-EP standards for a safe reuse for irrigation and MOS proved to be as effective as chemical coagulants such as lime and ferric iron for the removal of MTEs contained in wastewater. These results highlight the potential of MOSs as natural coagulants for reducing MTE content in domestic wastewater. This study could be the first to evaluate the effectiveness of MOS in reducing 10 MTEs, including As, Co, Se, Sr, Ti, and V, which are currently understudied. It could also provide a better understanding of the origin of MTEs found in domestic wastewaters and how an effective treatment process can result in high-quality treated wastewaters that can be reused for irrigation without posing health or environmental risks. However, more research on MOSs is needed to determine the type and composition of the coagulant substance found in the seeds, as well as the many mechanisms involved in the decrease in MTEs by MOSs, which is currently understudied. A better understanding of MOS structure is required to determine the optimum alternative for ensuring the optimal effect of MOS paired with WWTP in removing MTEs from domestic wastewaters.