Antiepileptic/teratogen valproate (VPA) is a histone deacetylase inhibitor/ epigenetic drug proposed for the antitumor therapy where it is generally crucial to target poorly or undifferentiated cells to prevent a recurrence. Transplanted rodent gastrulating embryos-proper (primitive streak and three germ layers) are the source of teratoma/teratocarcinoma tumors. Human primitive-streak remnants develop sacrococcygeal teratomas that may recur even when benign (well differentiated). To screen for unknown VPA impact on teratoma-type tumors, we used original 2-week embryoderived teratoma in vitro biological system completed by a spent media metabolome analysis. Gastrulating 9.5-day-old rat embryos-proper were cultivated in Eagle's minimal essential medium (MEM) with 50% rat serum (controls) or with the addition of 2 mM VPA. Spent media metabolomes were analyzed by FTIR. Compared to controls, VPA acetylated histones; significantly diminished overall teratoma growth, impaired survival, increased the apoptotic index, and decreased proliferation index and incidence of differentiated tissues (e.g., neural tissue). Control teratomas continued to grow and differentiate for 14 days in isotransplants in vivo, but in vitro VPA-treated teratomas resorbed. Principal component analysis of FTIR results showed that spent media metabolomes formed well-separated clusters reflecting the treatment and day of cultivation. In metabolomes of VPA-treated teratomas, we found elevation of previously described histone acetylation biomarkers [amide I a-helix and A(CH 3)/A(CH 2)]) with apoptotic biomarkers within the amide I region for b-sheets, and unordered and CH 2 vibrations of lipids. VPA may be proposed for therapy of the undifferentiated component of teratoma tumors and this biological system Abbreviations ASD, autism spectrum disorder; EC, embryonal carcinoma; GTS, growing teratoma syndrome; HDACi, histone deacetylase inhibitor; MEM, minimal essential medium; PCA, principal component analysis; PCNA, proliferating cell nuclear antigen; RMSEC, root mean square error of calibration; RMSECV, root mean square error of cross-validation; SAHA, suberoylanilidehydroxamic acid; VPA, valproate; WEC, whole rat embryo.