Bacteroides species are the most abundant Gram-negative bacteria of the human colonic microbiota. These endogenous organisms are unique in that they synthesize an extensive number of phase-variable surface polysaccharides. Pathogenic bacteria phase vary expression of surface molecules for immune evasion, but the importance of the synthesis of multiple phase-variable polysaccharides to these commensal bacteria is unknown. We previously showed that a Bacteroides fragilis mutant unable to synthesize 4 of the 8 capsular polysaccharides and unable to glycosylate proteins properly is rapidly outcompeted by the wild-type strain for colonization of the gnotobiotic mouse intestine. In the present study, we constructed mutants defective only in capsule polysaccharide synthesis to define better the importance of these surface molecules to intestinal colonization. We discovered a key enzymatic activity required for synthesis of 7 of the 8 capsular polysaccharides. Deletion of its gene resulted in the first B. fragilis mutant able to synthesize only one phase-variable polysaccharide, and further mutation resulted in a stable acapsular mutant. We show that the acapsular mutant is rapidly outcompeted, but synthesis of a single polysaccharide is sufficient for the organism to colonize the gnotobiotic intestine competitively. These data demonstrate that initial colonization of the gnotobiotic mouse intestine by B. fragilis requires that the organism synthesize only a single polysaccharide and suggest that the synthesis of multiple phase-variable polysaccharides is important for the bacteria's long-term maintenance in the normally complex and competitive ecosystem. acapsular ͉ microbiota ͉ phase variation ͉ polysaccharide ͉ glycoprotein T he human intestinal tract is home to a vast and diverse alliance of microbes comprising one of the densest microbial ecosystems in the world and one that provides functions essential to human health. Many species of the order Bacteroidales are abundant members of the human intestinal microbiota and have served as models for studying mutualistic bacterial-host relationships in this ecosystem (1, 2). Despite their importance, relatively little is known about the biology of the predominant members of this ecosystem. Deciphering how these mutualistic microorganisms successfully and stably colonize the human intestine may help us understand how they are tolerated, how different members interact with one another, what additional benefits the microbiota provide us, and how microbiotaassociated diseases are triggered in the susceptible host.The intestinal Bacteroidales synthesize a vast repertoire of surface glycans. A single strain of B. fragilis synthesizes 8 distinct capsular polysaccharides (3), an extracellular polysaccharide (4), and numerous glycoproteins (5). The synthesis of extensive numbers of glycosylated molecules is a general property of the intestinal Bacteroidales (6-8). We estimate that the genome of B. fragilis 9343 encodes Ϸ80 glycosyltransferases and dedicates at least 215,000 bp of ...