The within-host diversity of virus populations can be drastically limited during between-host transmission, with primary infection of hosts representing a major constraint to diversity maintenance. However, there is an extreme paucity of quantitative data on the demographic changes experienced by virus populations during primary infection. Here, the multiplicity of cellular infection (MOI) and population bottlenecks were quantified during primary mosquito infection by Venezuelan equine encephalitis virus, an arbovirus causing neurological disease in humans and equids.
RNA viral infections generally generate large and diverse populations within the infected host. This diversity plays a key role in important epidemiological and evolutionary processes (1-3). However, several steps during transmission can constrain the demographics and genetics of the virus population, with host primary infection being one of the main barriers.During primary infection, the number of initially infected cells is not infinite, potentially lowering the size and genetic diversity of the colonizing population compared to that present in the donor host. The multiplicity of cellular infection (MOI) in those cells is thus a fundamental parameter determining the demographics and genetics of the colonizing population. The MOI is the number of genomes of a virus that enter and replicate in a cell (4). This parameter impacts the size of population bottlenecks during primary infection because, for a given number of primary infected cells, the higher the MOI, the larger the colonizing population. Furthermore, the MOI also influences genetic diversity, as it largely defines the intensity of genetic exchange and complementation among genotypes during cell coinfection.Despite the importance of the MOI and population bottlenecks, there is a striking lack of formal estimates of these parameters, not only during primary infections but throughout the virus transmission cycle (reviewed in reference 4). Here, we use available data sets to estimate the demographics of Venezuelan equine encephalitis virus (VEEV), a mosquito-borne arbovirus, during the primary oral infection (i.e., the midgut infection) of its mosquito vectors.VEEV is an alphavirus in the family Togaviridae that periodically causes epidemics and equine epizootics. It circulates in two transmission cycles, the epizootic/epidemic (here called epizootic) and enzootic cycles, with distinct strains and mosquito species associated with each cycle. Enzootic VEEV strains are generally associated with the absence of disease in equids, with the exception of certain subtype IE strains (5), and transmission cycles are associated with forest mosquitos, mainly Culex (Melanoconion) spp., and rodent hosts. Epizootic strains tend to be highly pathogenic to equids and can be transmitted by mosquito species that feed principally on large mammals, like Aedes (Ochlerotatus) taeniorhynchus. Vector susceptibilities vary widely, with enzootic VEEV strains typically exhibiting highly efficient but specific infectivit...