Toxigenic
Microcystis
blooms periodically disrupt the stabilization ponds of wastewater treatment plants (WWTPs). Dense proliferations of
Microcystis
cells within the surface waters (SWs) impede the water treatment process by reducing the treatment efficacy of the latent WWTP microbiome. Further, water quality is reduced when conventional treatment leads to
Microcystis
cell lysis and the release of intracellular microcystins into the water column. Recurrent seasonal
Microcystis
blooms cause significant financial burdens for the water industry and predicting their source is vital for bloom management strategies. We investigated the source of recurrent toxigenic
Microcystis
blooms at Australia’s largest lagoon-based municipal WWTP in both sediment core (SC) and SW samples between 2018 and 2020. Bacterial community composition of the SC and SW samples according to 16S rRNA gene amplicon sequencing showed that
Microcystis
sp. was dominant within SW samples throughout the period and reached peak relative abundances (32%) during the summer. The same
Microcystis
Amplicon sequence variants were present within the SC and SW samples indicating a potential migratory population that transitions between the sediment water and SWs during bloom formation events. To investigate the potential of the sediment to act as a repository of viable
Microcystis
cells for recurrent bloom formation, a novel
in-vitro
bloom model was established featuring sediments and sterilized SW collected from the WWTP. Microcystin-producing
Microcystis
blooms were established through passive resuspension after 12 weeks of incubation. These results demonstrate the capacity of
Microcystis
to transition between the sediments and SWs in WWTPs, acting as a perennial inoculum for recurrent blooms.
IMPORTANCE
Cyanobacterial blooms are prevalent to wastewater treatment facilities owing to the stable, eutrophic conditions. Cyanobacterial proliferations can disrupt operational procedures through the blocking of filtration apparatus or altering the wastewater treatment plant (WWTP) microbiome, reducing treatment efficiency. Conventional wastewater treatment often results in the lysis of cyanobacterial cells and the release of intracellular toxins which pose a health risk to end users. This research identifies a potential seeding source of recurrent toxigenic cyanobacterial blooms within wastewater treatment facilities. Our results demonstrate the capacity of
Microcystis
to transition between the sediments and surface waters (SWs) of wastewater treatment ponds enabling water utilities to develop adequate monitoring and management strategies. Further, we developed a novel model to demonstrate benthic recruitment of toxigenic
Microcystis
under laboratory conditions facilitating future research into the genetic mechanisms behind bloom development.