It is well known that the incorporation of isotopically light metabolic carbon (C M ) significantly affects the stable carbon isotope (d 13 C) signal recorded in biogenic carbonates. This can obscure the record of d 13 C of seawater dissolved inorganic carbon (d 13 C DIC ) potentially archived in the shell carbonate. To assess the C M contribution to Mercenaria mercenaria shells collected in North Carolina, USA, we sampled seawater d 13 C DIC , tissue, hemolymph and shell d 13 C. All shells showed an ontogenic decrease in shell d 13 C, with as much as a 4& decrease over the lifespan of the clam. There was no apparent ontogenic change in food source indicated by soft tissue d 13 C values, therefore a change in the respired d 13 C value cannot be the cause of this decrease. Hemolymph d 13 C, on the other hand, did exhibit a negative relationship with shell height indicating that respired CO 2 does influence the d 13 C value of internal fluids and that the amount of respired CO 2 is related to the size or age of the bivalve. The percent metabolic C incorporated into the shell (%C M ) was significantly higher (up to 37%, with a range from 5% to 37%) than has been found in other bivalve shells, which usually contain less than 10%C M . Interestingly, the hemolymph did contain less than 10%C M , suggesting that complex fractionation might occur between hemolymph and calcifying fluids. Simple shell biometrics explained nearly 60% of the observed variability in %C M , however, this is not robust enough to predict %C M for fossil shells. Thus, the metabolic effect on shell d 13 C cannot easily be accounted for to allow reliable d 13 C DIC reconstructions. However, there does seem to be a common effect of size, as all sites had indistinguishable slopes between the %C M and shell height (+0.19% per mm of shell height).