Accurate knowledge of the contacts between surface roughness and the resultant wind speed are important for climatic models, wind power meteorology, agriculture and erosion hazards especially on sand saltation in arid and semi‐arid environments, where vegetation cover is scarce. In this study, synchronous measurements of three‐dimensional wind speed below 5 m are carried out in three different surface roughness conditions in Minqin, China, and the difference in the turbulence statistics and the structure of the very large‐scale motions (VLSMs) were revealed. The results show that the slope of the mean wind profile (MVP), the turbulent kinetic energy (TKE) and Reynolds stress increase with the surface roughness. The roughness seems to suppress the ejection events and the surface roughness will not only weaken the energy of the VLSMs, but also reduce the scale values of VLSMs near the wall. These influences may cause some changes regarding the dust transportation in streamwise and vertical directions during the sand and dust storm (SDS). That is, the decrease of the mean velocity near the ground will reduce the dust transportation in the streamwise direction and influence of the roughness on the ejection and sweep events will change the dust transportation in the vertical direction. Furthermore, the increase of roughness will weaken the scale and energy of VLSMs, which will lead to the decrease of the capacity of dust transportation. © 2019 John Wiley & Sons, Ltd.