Enterovirus 71 (EV71), which belongs to the genus Enterovirus of the family Picornaviridae, is one of the major pathogens that cause hand, foot and mouth disease, primarily in infants and young children. In recent years, epidemic and sporadic outbreaks of neurovirulent EV71 infections have been reported in many countries and regions, including Japan, China and Taiwan [1]. However, there is still no effective antiviral treatment against severe EV71 infections, and no vaccine is available.During their life cycle, viruses can induce many changes in their host cells including increased plasma membrane permeability [2]. Although its detailed mechanism remains largely unknown, this effect on the plasma membrane could be due to the expression of many virusencoded proteins [3][4][5]. The expression of protein 2B from polioviruses and coxsackieviruses can increase the permeability of the cell membrane to the translational inhibitor hygromycin B [6,7]. A recent study that focused on protein 2B from coxsackievirus B3 (CVB3) showed that 2B can facilitate virus release by increasing the concentration of free cytosolic Ca 2+ [8]. However, little is known about 2B proteins from other enteroviruses, and the detailed mechanisms of how 2B changes cellular ion homeostasis and, thus, promotes virion release remain unclear.Because the 2B protein of CVB3 can form homodimers and homotetramers that are located primarily in the cell membrane system, including the Golgi complex [9, 10], we asked whether the 2B proteins of EV71 might share similar characteristics. To address this question, the sequences of the 2B genes from these two viruses were compared. These sequences have relatively high similarity, especially within their two transmembrane domains (TM1 and TM2), structures that are essential for the function of viroporins (Supplementary information, Figure S1A). Next, we examined the subcellular localization of the EV71 2B protein in human rhabdomyosarcoma (RD) cells and found that it colocalized with the Golgi complex (Supplementary information, Figure S1B).