The sensitivity of a multiplex PCR for the virulence factors VT1, VT2 and eaeA specific for enterohaemorrhagic Escherichia coli (target cells, T) was adversely affected when non-pathogenic E. coli (non-target, NT) cells were present. In the absence of NT cells the sensitivity, obtained by decimally diluting the T cell culture, was T −10 (³10 cfu ml −1 ) for eaeA and VT2, and T −5 (ca 10 4 cfu ml −1 T) for VT1 virulence factors. When approximately 10 9 cfu ml −1 NT cells (NT 0 dilution) were present, the sensitivity dropped to T −2 , T −3 and T −1 (ca 10 7 , 10 6 and 10 8 cfu ml −1 T) for eaeA, VT2 and VT1, respectively. At NT −1 (ca 10 8 cfu ml −1 NT) or higher dilutions the sensitivity of eaeA and VT2 was the same as when no NT cells were present. In respect of VT1 the sensitivity gradually increased until at NT −4 the sensitivity was the same as when NT cells were completely absent. This work indicates that caution should be exercised when interpreting PCR results particularly when substantial non-target cell populations are suspected.