Covalent labeling
of proteins in combination with mass spectrometry
has been established as a complementary technique to classical structural
methods, such as X-ray, NMR, or cryogenic electron microscopy (Cryo-EM),
used for protein structure determination. Although the current covalent
labeling techniques enable the protein solvent accessible areas with
sufficient spatial resolution to be monitored, there is still high
demand for alternative, less complicated, and inexpensive approaches.
Here, we introduce a new covalent labeling method based on fast fluoroalkylation
of proteins (FFAP). FFAP uses fluoroalkyl radicals formed by reductive
decomposition of Togni reagents with ascorbic acid to label proteins
on a time scale of seconds. The feasibility of FFAP to effectively
label proteins was demonstrated by monitoring the differential amino
acids modification of native horse heart apomyoglobin/holomyoglobin
and the human haptoglobin–hemoglobin complex. The obtained
data confirmed the Togni reagent-mediated FFAP is an advantageous
alternative method for covalent labeling in applications such as protein
footprinting and epitope mapping of proteins (and their complexes)
in general. Data are accessible via the ProteomeXchange server with
the data set identifier PXD027310.