Over population of marine sea urchins (Diadema setosum) may disrupt the growth of Crustose coralline causing the reduction of coral reefs growth. Consumption of Diadema setosum gonads as the alternative food may assists to preserve the balance of coral reefs ecosystem. The Objective of this study was to measure and evaluate the nutrient content of the gonad of Diadema setosum. Mass spectrophotometer was used to measure vitamin and albumin contents, Kjeldahl methods for protein content, and Atomization method for trace elements (Fe, Mg, and Zn) content. The presence of active compounds such as steroids, amino acids and antioxidants were identified by thin-layer chromatograph (TLC). Protein, albumin, vitamin A, vitamin E and trace elements (Fe, Mg, and Zn) were found in the gonad of Diadema setosum. Vitamin E (23.47 mg) was the highest nutrient content compared to other nutrient elements. The extracts of the gonad of Diadema setosum were found to have steroid, amino acids and antioxidant compounds. Overall, nutrient contents and active compounds in the gonad of Diadema setosum are essential components needed for immune system, therefore besides its potency as alternative food source, gonad of Diadema setosum has potency to become the source of immune-nutrient.