Vogesella facilis sp. nov., isolated from a freshwater river, and emended description of the genus Vogesella

Sheu, Shih-Yi; Chen, Jhen-Ci; Young, Chiu-Chung; Chen, Wen-Ming

doi:10.1099/ijsem.0.000797

“…Vogesella species belong to the family Neisseriaceae, order Neisseriales, class Betaproteobacteria, mainly characterized as Gram-negative, rod-shaped, aerobic or facultatively anaerobic and chemoheterotrophic bacteria [1][2][3][4][5][6][7][8][9][10]. So far as we know, there are no reported cases of human disease caused by Vogesella species.…”

Section: Introductionmentioning

confidence: 99%

Vogesella perlucida-induced bacteremia in an advanced-age patient: first case report

Yu¹,

Zhu²,

Tao³

et al. 2020

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Background Vogesella species are common aquatic, Gram-negative rod-shaped bacteria, originally described in 1997. Vogesella perlucida was first isolated from spring water in 2008. Furthermore, bacterial pathogenicity of Vogesella perlucida has never been reported. Here, we report the first case of rare Vogesella perlucida-induced bacteremia in an advanced-age patient with many basic diseases and history of dexamethasone abuse. Case presentation A 71-year-old female was admitted with inflamed upper and lower limbs, rubefaction, pain and fever (about 40 °C). She had been injured in a fall at a vegetable market and then touched river snails with her injury hands. A few days later, soft tissue infection of the patient developed and worsened. Non-pigmented colonies were isolated from blood cultures of the patient. Initially, Vogesella perlucida was wrongly identified as Sphingomonas paucimobilis by Vitek-2 system with GN card. Besides, we failed to obtain an acceptable identification by the MALDI-TOF analysis. Finally, the isolated strain was identified as Vogesella perlucida by 16S rRNA gene sequences. In addition, the patient recovered well after a continuous treatment of levofloxacin for 12 days. Conclusion Traditional microbiological testing system may be inadequate in the diagnosis of rare pathogenic bacteria. Applications of molecular diagnostics techniques have great advantages in clinical microbiology laboratory. By using 16S rRNA gene sequence analysis, we report the the first case of rare Vogesella perlucida-induced bacteremia.

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“…Other detailed results of the morphological, physiological and biochemical characteristics of all 13 strains are given in . The polar lipids of strains LYT10W, LYT16W, LYT22W, LYT23W, LYT24W and SH7W were similar, including phosphatidylglycerol, phosphatidylethanolamine, diphosphatidylglycerol, two unidentified aminolipids (AL1 and AL2), one unidentified lipid and an unidentified aminophospholipid, which is similar to those of the species of the genus Vogesella [7–12]. Comparing the above six strains, strain DC21W T did not contain AL2 and strain LYT5W T did not contain aminophospholipid.…”

Section: Resultsmentioning

confidence: 88%

“…The original descriptions of the species of the genus Vogesella [3] were emended later by Subhash et al . [7] and Sheu et al [8, 10]. The species of the genus Vogesella are Gram-stain-negative, aerobic or facultatively anaerobic, rod-shaped, motile or non-motile.…”

Section: Introductionmentioning

confidence: 99%

“…The type species was Vogesella indigofera . At the time of writing, the genus Vogesella contained 10 validly published species, including Vogesella indigofera isolated from garden soil [3], Vogesella perlucida isolated from spring water [4], Vogesella lacus isolated from a soft-shell turtle culture pond [5], Vogesella mureinivorans isolated from lake water [6], Vogesella alkaliphila isolated from an alkaline soil [7], Vogesella fluminis [8], Vogesella amnigena [9] and Vogesella facilis [10] isolated from freshwater rivers, Vogesella oryzae isolated from the rhizosphere of saline-tolerant pokkali rice [11], and Vogesella urethralis isolated from human urine [12] (https://lpsn.dsmz.de/genus/vogesella). Most species were isolated from freshwater samples.…”

Section: Introductionmentioning

confidence: 99%

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Vogesella aquatica sp. nov. and Vogesella margarita sp. nov., isolated from rivers in Southwest China

Lu,

Chen,

Kong

et al. 2023

International Journal of Systematic and Evolutionary Microbiology

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Eight Gram-stain-negative, aerobic, short rod-shaped and motile strains (DC21WT, LYT5WT, LYT10W, LYT16W, LYT22W, LYT23W, LYT24W and SH7W) were isolated from rivers in Southwest China. Comparisons based on the 16S rRNA gene sequences showed that strain DC21WT shared the highest 16S rRNA gene sequence similarity (99.6 %) with Vogesella mureinivorans 389T, strain LYT5WT shared 99.2 % with Vogesella fluminis Npb-07T, and the other isolated strains took Vogesella indigofera DSM 3303T as their most similar strain, respectively. The phylogenetic trees reconstructed based on the 16S rRNA gene sequences also supported that strains V. mureinivorans 389T, V. fluminis Npb-07T and V. indigofera DSM 3303T were the closest neighbours of the isolated strains. The phylogenomic tree showed similar phylogenetic relationships among these strains. The calculated OrthoANIu and digital DNA–DNA hybridization values among strains DC21WT, LYT5WT and other related strains were less than 93.7 and 53.7 %, respectively. The calculated OrthoANIu and digital DNA–DNA hybridization values among strains LYT10W, LYT16W, LYT22W, LYT23W, LYT24W, SH7W and V. indigofera DSM 3303T ranged from 94.8 to 97.2 % and from 59.8 to 74.9 %, respectively. Although these values were located in the transition region of species demarcation, their similar phenotypic, biochemical and genotypic characteristics supported that these six strains should be assigned to the species V. indigofera . Comparative genomic analyses showed that only V. indigofera DSM 3303T harboured 19 genes encoding the Type VI secretion system. Combining above descriptions, strains DC21WT and LYT5WT should represent two independent novel species of the genus Vogesella , for which the names Vogesella aquatica sp. nov. (type strain DC21WT=GDMCC 1.3220T=KCTC 92556T) and Vogesella margarita sp. nov. (type strains LYT5WT=GDMCC 1.3213T=KCTC 92549T) are proposed, respectively.

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“…In general, the sediment samples had a higher representation of Draconibacterium , Thermomarinilinea , and Clostridium sensu stricto , while the water phase samples showed more differentiation, with the following genera most represented: Flavobacterium , Gplla, and Parcubacteria (Gull_A); Mycobacterium and Hydrogenophaga (Gull_B); and Malikia , Vogesella , and Hydrogenophaga (Gull_C). These genera have been found in various environmental samples ( 9 – 18 ). Few to no typical coliform bacteria were identified, suggesting no significant contamination of the pond.…”

Section: Announcementmentioning

confidence: 99%

Bacterial Diversity of Water and Sediment Samples from Gull Point State Park (West Okoboji, Iowa) Determined Using 16S rRNA Gene Amplicon Sequencing

Kyndt

¹

2021

Microbiol Resour Announc

0

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Vogesella facilis sp. nov., isolated from a freshwater river, and emended description of the genus Vogesella

Abstract: Vogesella facilis sp. nov., isolated from a freshwater river, and emended description of the genus Vogesella

Cited by 10 publications

References 35 publications

Vogesella perlucida-induced bacteremia in an advanced-age patient: first case report

Vogesella perlucida-induced bacteremia in an advanced-age patient: first case report

Vogesella aquatica sp. nov. and Vogesella margarita sp. nov., isolated from rivers in Southwest China

Bacterial Diversity of Water and Sediment Samples from Gull Point State Park (West Okoboji, Iowa) Determined Using 16S rRNA Gene Amplicon Sequencing

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