The perception of external sensory information by the brain requires highly ordered synaptic connectivity between peripheral sensory neurons and their targets in the central nervous system. Since the discovery of the whisker-related barrel patterns in the mouse cortex, the trigeminal system has become a favorite model for study of how its connectivity and somatotopic maps are established during development. The trigeminal brainstem nuclei are the first CNS regions where whisker-specific neural patterns are set up by the trigeminal afferents that innervate the whiskers. In particular, barrelette patterns in the principal sensory nucleus of the trigeminal nerve provide the template for similar patterns in the face representation areas of the thalamus and subsequently in the primary somatosensory cortex. Here, we describe and review studies of neurotrophins, multiple axon guidance molecules, transcription factors, and glutamate receptors during early development of trigeminal connections between the whiskers and the brainstem that lead to emergence of patterned face maps. Studies from our laboratories and others' showed that developing trigeminal ganglion cells and their axons depend on a variety of molecular signals that cooperatively direct them to proper peripheral and central targets and sculpt their synaptic terminal fields into patterns that replicate the organization of the whiskers on the muzzle. Similar mechanisms may also be used by trigeminothalamic and thalamocortical projections in establishing patterned neural modules upstream from the trigeminal brainstem. The somatotopic map forms sequentially, beginning at the periphery and ending in the primary somatosensory cortex. In some species, such as rodents, neural modules form within the CNS body maps that correspond to patterned distribution of the sensory receptors in the periphery. In the mouse and rat muzzle, whiskers and sinus hairs are patterned in discrete arrays with constant numbers in each row of follicles (Yamakado and Yohro, 1979;Dörfl, 1985;Rice et al., 1986Rice et al., , 1993Brecht et al., 1997). The infraobital nerve (ION) of the trigeminal ganglion (TG) innervates the whisker pad and relays the whiskerrelated information to the principal sensory nucleus (PrV) in the brainstem, which in turn conveys the signals to the thalamus and the cortex via ascending afferents. The trigeminal brainstem complex also contains the spinal trigeminal nucleus, including subnuclei oralis (SpVo), inter-*Correspondence to: Reha S. Erzurumlu,