“…The pre-processing, performed by an in-house code, prepares two files for the simulation, an ABAQUS input file (*.inp) and a text file (*.txt) for describing the topology of the defined user elements. There are also commercial software packages available for generating polyhedral meshes and can be used together with our source code, to name a few, STAR-CCM+ [52], ANSYS Fluent [53], and VoroCrust [54]. As the visualization of user elements is not directly supported by ABAQUS CAE, we output the nodal displacements through ABAQUS and write the result to external files which can be visualized by ParaView [55].…”