Performing a systematic Bogoliubov-de Gennes spectral analysis, we illustrate that stationary vortex lines, vortex rings, and more exotic states, such as hopfions, are robust in three-dimensional atomic Bose-Einstein condensates, for large parameter intervals. Importantly, we find that the hopfion can be stabilized in a simple parabolic trap, without the need for trap rotation or inhomogeneous interactions. We supplement our spectral analysis by studying the dynamics of such stationary states; we find them to be robust against significant perturbations of the initial state. In the unstable regimes, we not only identify the unstable mode, such as a quadrupolar or hexapolar mode, but we also observe the corresponding instability dynamics. Furthermore, deep in the Thomas-Fermi regime, we investigate the particlelike behavior of vortex rings and hopfions.