AquaMeld, a novel method for reusing agricultural and industrial wastewater in rivers and lakes, is presented in this article. Water shortage and environmental sustainability are major problems, making wastewater treatment a responsibility. Customizing solutions for varied stakeholders and environmental conditions using standard methods is challenging. This study uses AquaMeld and Multi-Layer Perceptron with Recurrent Neural Network (MLP-RNN) algorithms to create a complete recommendation system. AquaMeld uses MLP-RNN to evaluate complicated wastewater, environmental, and pH data. AquaMeld analyses real-time data to recommend wastewater reuse systems. This design can adapt to changing scenarios and user demands, helping ideas grow. This technique does not assume data follows a distribution, which may reduce the model’s predictive effectiveness. Instead, it forecasts aquatic quality using RNN-MLP. The main motivation is combining the two models into the MLP-RNN to improve prediction accuracy. RNN handles sequential data better, whereas MLP handles complex nonlinear relationships better. MLP-RNN projections are the most accurate. This shows how effectively the model handles complicated, time- and place-dependent water quality data. If other environmental data analysis projects have similar limits, MLP-RNN may work. AquaMeld has several benefits over traditional methods. The MLP-RNN architecture uses deep learning to assess complicated aquatic ecosystem interactions, enabling more proactive and accurate decision-making is the most accurate with a 98% success rate. AquaMeld is flexible and eco-friendly since it may be used for many agricultural and industrial operations. AquaMeld helps stakeholders make better, faster water resource management choices. Models and field studies in agricultural and industrial contexts examine AquaMeld’s efficacy. This strategy enhances environmental sustainability, resource exploitation, and wastewater reuse over previous ones. According to the results, AquaMeld might transform wastewater treatment. River and lake-dependent companies and agriculture may now use water resource management methods that are less destructive.