At the heart of the milk system are the colloidal casein-calcium-transport complexes termed the casein micelles. The application of physical chemical techniques such as light, neutron, and X-ray scattering, and Electron Microscopy (EM) has yielded a wealth of experimental detail concerning the structure of the casein micelle. From these experimental data bases have arisen two conflicting models for the internal structure of the casein micelle. One model emphasizes protein submicellar structures as the dominant feature, while the other proposes that inorganic calcium phosphate nanoclusters serve this function. In this study, these models are critically examined in light of the two current primary dogmas of structural biology which are: protein structure gives rise to function and that competent and productive protein-protein interactions (associations) will lead to efficient transit through the mammary secretory apparatus. In this light an overwhelming argument can be made for the formation of proteinaceous complexes (submicelles) as the formative agents in the synthesis of casein micelles in mammary tissue. Whether these submicelles persist in milk has been questioned. Recently we have carried out studies on casein micelles and submicelles using Atomic Force Microscopy (AFM) and high resolution Transmission Electron Microscopy (TEM) to gain insights on the nature of protein-protein interactions in submicelles and micelles from a structural biology perspective. The results provide experimental evidence that protein-protein interactions are important in the formation and stabilization of casein micelles. milk / micelle / casein / structure / protein-protein interaction