The breast cancer 1 protein (
BRCA1
) facilitates DNA repair, preventing embryolethality and protecting the fetus from reactive oxygen species (
ROS
)-induced developmental disorders mediated by oxidatively damaged DNA. Alcohol (ethanol,
EtOH
) exposure during pregnancy causes fetal alcohol spectrum disorders (
FASD
), characterized by aberrant behaviour and enhanced ROS formation and proteasomal protein degradation. Herein, ROS-producing NADPH oxidase (
NOX
) activity was higher in
Brca1
+/− vs. +/+ fetal and adult brains, and further enhanced by a single EtOH exposure. EtOH also enhanced catalase and proteasomal activities, while conversely reducing BRCA1 protein levels without affecting
Brca1
gene expression. EtOH-initiated adaptive postnatal freezing behaviour was lost in
Brca1
+/− progeny. Pretreatment with the free radical spin trap and ROS inhibitor phenylbutylnitrone blocked all EtOH effects, suggesting ROS-dependent mechanisms. This is the first
in vivo
evidence of NOX regulation by BRCA1, and of EtOH-induced, ROS-mediated depletion of BRCA1, revealing novel mechanisms of BRCA1 protection in FASD.