Background There are several published anthropometric equations to estimate body fat percentage (BF%), and this may prompt uncertainty about their application. Purpose To analyze the accuracy of several anthropometric equations (developed in athletic [AT] and nonathletic [NAT] populations) that estimate BF% comparing them with DXA. Methods We evaluated 131 professional male soccer players (body mass: 73.2 ± 8.0 kg; height: 177.5 ± 5.8 cm; DXA BF% [median, 25th–75th percentile]: 14.0, 11.9–16.4%) aged 18 to 37 years. All subjects were evaluated with anthropometric measurements and a whole body DXA scan. BF% was estimated through 14 AT and 17 NAT anthropometric equations and compared with the measured DXA BF%. Mean differences and 95% limits of agreement were calculated for those anthropometric equations without significant differences with DXA. Results Five AT and seven NAT anthropometric equations did not differ significantly with DXA. From these, Oliver's and Civar's (AT) and Ball's and Wilmore's (NAT) equations showed the highest agreement with DXA. Their 95% limits of agreement ranged from −3.9 to 2.3%, −4.8 to 1.8%, −3.4 to 3.1%, and −3.9 to 3.0%, respectively. Conclusion Oliver's, Ball's, Civar's, and Wilmore's equations were the best to estimate BF% accurately compared with DXA in professional male soccer players.