Whole-genome sequence data and analysis of Saccharibacillus sp. ATSA2 isolated from Kimchi cabbage seeds

Abstract

Saccharibacillus sp. ATSA2 was isolated from Kimchi cabbage seeds grown in Gyeongbuk province in the Republic of Korea. Whole-genome sequencing of Saccharibacillus sp. ATSA2 was performed using the PacBio RSII and Illumina HiSeq platforms, and it features a 5,619,468 bp circular chromosome with 58.4% G + C content. The genome includes 4543 protein-coding genes, 104 RNA genes (70 transfer RNA genes, 30 ribosomal RNA genes, and 4 non-coding RNA), and 73 pseudogenes. Multiple gene clusters associated with stress responses, nitrogen and phosphorus metabolism, and plant hormone biosynthesis were annotated in the genome. The genome information will provide fundamental knowledge of this organism as well as insight for understanding microbial activity in the agricultural application. The whole-genome sequence of Saccharibacillus sp. ATSA2 is available at GenBank/EMBL/DDBJ under accession number CP041217.

Genome insights into the plant growth-promoting bacterium Saccharibacillus brassicae ATSA2T

“…The whole genome of strain ATSA2 T was sequenced as described in our previous studies (Jiang et al 2019b ; Jiang et al 2020 ) (accession number CP041217). The Kyoto Encyclopedia of Genes and Genomes (KEGG) GENOME database, RastSEED (Henry et al 2010 ) and BlastKOALA were used for metabolic pathway analysis (Du et al 2014 ; Kanehisa and Goto 2000 ; Kanehisa et al 2016 ) and gene functional mining for PGP traits such as the phytohormone IAA.…”

Whole-Genome Sequencing of a Chlorimuron-Ethyl-Degrading Strain: Chenggangzhangella methanolivorans CHL1 and Its Degrading Enzymes

“…Sequencing of the genomic DNA of strain CHL1 was performed by Personal Biotechnology Co. (Guangzhou, China), using Pacific Bioscience Sequel technology ( 33 – 35 ). The complete genome sequence of strain CHL1 was assembled using Mecat2 and Unicycle and was annotated using the Non-Redundant Protein Sequence (NR), Swiss-Prot Protein Sequence (Swiss-Prot), Pfam protein domain (Pfam), Clusters of Orthologous Groups of Proteins (COG), Gene Ontology (GO), and Kyoto Encyclopedia of Genes and Genomes (KEGG) databases.…”

Genome Insights into the Plant Growth-Promoting bacterium Saccharibacillus brassicae ATSA2T

“…COG annotation results showed 4,604 protein-coding genes (CDSs) and 4,312 eggnog database-matched proteins in the whole genome. Interestingly, 1.7% (75) of the genes corresponded to defense mechanisms, 1.1% (49) were associated with motility, 3.3% (145) of the genes were related to the cell wall and membrane biosynthesis, 5.6% (243) of the genes corresponded to amino acid transport and metabolism, and 6.0% (260) of the genes were grouped into ion transport and metabolism (Fig. 2).…”