Biosorption processes have recently become an economic and eco-friendly solution for the treatment of industrial wastewater. This study aimed to evaluate the potential application of Wickerhamomyces anomalus as a natural biosorbent for the removal of toxic synthetic dye Acid Red 14 (AR14). Biosorption kinetics modelling showed that the pseudo-second-order and intraparticle diffusion models were more suitable to fit the experimental data. In addition, the Langmuir model was the most appropriate isotherm to explain the AR14-W. anomalus biosorption system. Thus, the physicochemical properties of W. anomalus biomass before and after dye biosorption were characterized by scanning electron microscopy with energy dispersive X-Ray analysis, fourier-transform infrared spectroscopy, zeta potential, zero-point charge and contact angle measurement. The functional groups such as hydroxyl, carboxyl, amide, and amine present on the yeast wall surface can be responsible for AR14 biosorption. Finally, the Plackett-Burman design was used to screen the most influencing factors on the biosorption process, including dye concentration, dose of yeast biomass, temperature, shaking speed, and contact time. The latter was optimized according to the Box-Behnken design and the optimum AR14-biosorption was attained at pH 3–4, with lower initial dye concentrations (50–75 mg L− 1) and yeast biomass (1.25 g L− 1). These findings suggest that W. anomalus biomass could be used as an efficient, low-cost, and eco-friendly biosorbent for the removal of toxic dyes from the aqueous environment.