Raman spectroscopy, amplified by surface enhanced Raman scattering (SERS) nanoparticles, is a molecular imaging modality with ultra-high sensitivity and the unique ability to multiplex readouts from different molecular targets using a single wavelength of excitation. This approach holds exciting prospects for a range of applications in medicine, including identification and characterization of malignancy during endoscopy and intraoperative image guidance of surgical resection. The development of Raman molecular imaging with SERS nanoparticles is presently limited by long acquisition times, poor spatial resolution, small field of view, and difficulty in animal handling with existing Raman spectroscopy instruments. Our goal is to overcome these limitations by designing a bespoke instrument for Raman molecular imaging in small animals. Here, we present a unique and dedicated small-animal Raman imaging instrument that enables rapid, high-spatial resolution, spectroscopic imaging over a wide field of view (> 6 cm 2 ), with simplified animal handling. Imaging of SERS nanoparticles in small animals demonstrated that this small animal Raman imaging system can detect multiplexed SERS signals in both superficial and deep tissue locations at least an order of magnitude faster than existing systems without compromising sensitivity.R aman spectroscopy is a powerful bioanalytical tool based on the inelastic scattering of photons by molecular bonds; as each bond has a characteristic vibrational energy, the spectrum of Raman scatter peaks provides a unique fingerprint for a given sample. In vivo applications previously were limited by the relatively weak Raman effect (fewer than one event per 10 7 elastic scattering events) and poor depth of penetration (<1 mm). Recently, surface enhanced Raman scattering (SERS) was shown to overcome these limitations, enabling the use of Raman spectroscopy for molecular imaging in small living subjects (1-4).SERS is a plasmonic effect in which molecules adsorbed on a rough metal surface experience a >10 6 -fold increase in Raman scatter intensity (5). The SERS enhancement may be exploited in vivo by coating Raman active molecules onto gold nanoparticles (6), which can be engineered to target specific disease markers (7). Advantages of this approach, as opposed to other optical spectroscopy techniques, include a high sensitivity of detection, a low intrinsic background signal, the environmental and optical stability of nanoparticles, and the ability to multiplex signals from different biological targets (6). Therefore, Raman molecular imaging is not only attractive for studies in small animals, it is also being developed for clinical translation through endoscopy and as an intraoperative imaging approach to guide surgical resection (8,9). Despite the substantial increase in signal afforded by the SERS approach, reports of in vivo Raman imaging using SERS are relatively rare. Expansion of this promising technique currently is limited by the lack of a dedicated Raman spectroscopy instrument speci...