“…The model is divided into modules, each of which manages one type of information. For the study, some fundamental modules were used, such as the hydrodynamic module, which calculates the flow properties as the water elevation and velocity fields (Vaz et al, 2007;Janeiro et al, 2008;Deus et al, 2013); water properties module, responsible for managing the evolution of variables, including their transport through streams, river discharge, sedimentation and the interaction with the bottom and with the surface (involving exchanges of heat and oxygen), and the water quality module, responsible for simulation of biogeochemical processes and the spatial and temporal variability of water quality variables in the water column (Deus et al, 2013).…”