Interesting aesthetic properties of tropical woods, like surface texture and colour, are rarely impaired due to weathering, rotting and other degradation processes. This study analyses the colour of 21 tropical woods before and after six weeks of intentional attack by the brown-rot fungus Coniophora puteana. The CIEL*a*b* colour system was applied for measuring the lightness, redness and yellowness, and from these parameters the hue tone angle and colour saturation were calculated. Lighter tropical woods tended to appear a less red and a more yellow, and had a greater hue tone angle. However, for the original woods was not found dependence between the lightness and colour saturation. Tropical woods at attack by C. puteana lost a weight from 0.08% to 6.48%. The lightest and moderately light species—like okoumé, iroko, ovengol and sapelli—significantly darkened, while the darkest species—wengé and ipé—significantly lightened. The majority of tropical woods obtained a brighter shade of yellow, typically wengé, okoumé and blue gum, while some of them also a brighter shade of green, typically sapelli, padouk and macaranduba. C. puteana specifically affected the hue tone angle and colour saturation of tested tropical woods, but without an apparent changing the tendency of these colour parameters to lightness. The total colour difference of tested tropical woods significantly increased in connection with changes of their lightness (ΔE*ab = 5.92 − 0.50·ΔL*; R2 = 0.37), but it was not influenced by the red and yellow tint changes, and weight losses.