It is known that when there are several D-branes, their space-time coordinates in general become noncommutative. From the point of view of noncommutative geometry, it reflects noncommutativity of the world volume of the D-branes. On the other hand, as we showed in the previous work, in the presence of the constant antisymmetric tensor field the momentum operators of the D-branes have noncommutative structure. In the present paper, we investigate a relation between these noncommutativities and the description of D-branes in terms of the noncommutative Yang-Mills theory recently proposed by Seiberg and Witten. It is shown that the noncommutativity of the Yang-Mills theory, which implies that of the world volume coordinates, originates from both noncommutativities of the transverse coordinates and momenta from the viewpoint of the lower-dimensional D-branes. Moreover, we show that this noncommutativity is transformed by coordinate transformations on the world volume and thereby can be chosen in an arbitrary fixed value. We also make a brief comment on a relation between this fact and a hidden symmetry of the IIB matrix models. * e-mail address: kuroki@tanashi.kek.jp † Accordingly Matrix theory or a low energy effective field theory of D-branes on a torus in the constant antisymmetric field background is described by a gauge theory on a noncommutative torus [6,7]. * * For example, in [5] such a boundary state is concretely constructed.