Brewing using enzyme rich ‘green’ (germinated, but not kilned) malt has the potential to unlock considerable energy savings in the malting and brewing chain. This paper examines the major quality issues associated with green malt, by monitoring lipoxygenase (LOX) activity and S‐methyl methionine (SMM) levels through a micromalting cycle both with and without rootlets after 48 h of germination. The data suggest that rootlets are a major concern when brewing with green malt and that their influence on wort and beer quality needs to be further investigated. Lipoxygenase activity and nonenal potential were measured following treatment under varying conditions of pH, temperature and pre‐treatment. Results indicated that lipoxygenase activity can be controlled to a substantial degree by manipulating these limiting factors, while preserving diastatic enzyme activity. Green malt worts were then prepared from (i) whole green malt immediately post‐germination; (ii) heat treated green malt (65°C x 1 h); (iii) re‐steeped green malt and (iv) endosperm‐rich extracts of green malt after the husk and rootlets had been removed; using laboratory mashing with a ‘LOX‐hostile’ mash schedule. Data were compared with mashing of kilned pale malt made from the same green malt, as a reference point. Based on the present data, re‐steeping of green malt in combination with a LOX hostile mashing environment (63°C, pH 5.2) could help to control LOX activity and the trans‐2‐nonenal potential of green malt. The resultant brewing process would need to be optimised to deal with the elevated SMM levels in green malt worts. © 2020 The Authors. Journal of the Institute of Brewing published by John Wiley & Sons Ltd on behalf of The Institute of Brewing & Distilling