Endogenous retroviral sequences in the pig genome (PERV) represent a potential infectious risk in xenotransplantation. All known infectious PERV have been asssigned to the PERV ␥1 family, consisting of the subfamilies A, B, and C. The aim of the study was the concise examination of PERV ␥ by the analysis of the retroviral pro-pol sequences. The analysis of 52 pro-pol clones amplified in this study revealed eight PERV ␥ families. In addition to four already-described families (␥1, ␥4, ␥5, ␥6), four novel families (␥7, ␥8, ␥9, ␥10) were identified. Quantitative analysis of the novel PERV ␥ sequences in selected breeds revealed variations in the endogenous retroviral load. Open reading frames (ORF) in the amplified proviral fragment were only found for PERV ␥1. In addition, novel ORF-containing PERV ␥1 clones consisting of hybrid sequences were revealed. Sequence comparison from published full-length PERV ␥1 clones of the PERV subfamilies A, B, and C resulted in a lack of strict correlation of the classification of pro-pol and env. The results indicated the occurrence of causative recombination events between retroviral genomes. Thus, our study on PERV ␥ provides new data for the evaluation and selection of pigs intended to be used in xenotransplantation.