Background and Aims
Investigating plant structure is fundamental in botanical science and provides crucial knowledge for the theories of plant evolution, ecophysiology, and for the biotechnological practices. Modern plant anatomy often targets the formation, localization and characterization of cellulosic, lignified, or suberized cell walls. While classical methods developed in the 60s are still popular, recent innovations in tissue preparation, fluorescence staining, and microscopy equipment offer advantages to the traditional practices for investigation of the complex lignocellulosic walls. Our goal is to enhance the productivity and quality of microscopy work by focusing on quick and cost-effective preparation of thick sections or plant specimen surfaces and efficient use of direct fluorescent stains.
Methods
We discuss popular histochemical microscopy techniques for visualization of cell walls, such as autofluorescence or staining with calcofluor, Congo red (CR), fluorol yellow (FY), safranin, and provide detailed descriptions of our own approaches and protocols.
Key Results
Autofluorescence of lignin in combination with CR and FY staining can clearly differentiate between lignified, suberized, and unlignified cell walls in root and stem tissues. Glycerol can serve as an effective clearing medium as well as the carrier of FY for staining of suberin and lipids allowing for observation of thick histological preparations. Three-dimensional imaging (3D) of all cell types together with chemical information by wide-field fluorescence or CLSM was achieved.