Metal pyrithiones (MePTs) are used as emerging antifouling biocides. Our recent studies have shown that one of the degradation products of MePTs, 2,2′-dithio-bis-pyridine, is a potential endocrine-disrupting chemical. However, the direct target remains unknown. This study was conducted to determine whether MePTs and their degradation products interact with estrogen receptor α (ERα). Electrochemical biosensors showed that MePTs and their degradation products bound to ERα. A twohybrid yeast assay and E-screen indicated that co-exposure of MePTs and their degradation products to 17β-estradiol (E2) significantly inhibited E2-induced β-galactosidase activities and MCF-7 cell proliferation, with 30% inhibition concentrations ranging from 6.39 × 10 −9 to 4.56 × 10 −5 , suggesting their antiestrogenic activities in vitro. Among the eight compounds, 2-mercaptopyridine N-oxide (HPT) showed the most potent antagonism. Confocal microscope observation indicated that 10 −7 mol/L HPT exposure caused an ectopic location of a partial primordial germ cell in EGFP-nanos-3′UTR transgenic line zebrafish embryos, and an enzyme-linked immunosorbent assay showed that 10 −7 mol/L HPT exposure downregulated hepatic vitellogenin protein levels in wild-type adult female zebrafish, indicating its ERα antagonism at an environmentally relevant concentration in vivo. Molecular docking showed that Glu353 participated in the hydrogen bond interaction of HPT with ERα. This study demonstrates that MePTs and their degradation products act as antagonists toward ERα.